SMTL ID : 9c9v.3 (2 other biounits)

HBV capsid with compound 3i

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

homo-dimer

Ligands

2 x 01: N'-(3-chloro-4-fluorophenyl)-N-(2-methylpropyl)-N-[(1R)-1-(1-oxo-1,2-dihydroisoquinolin-4-yl)ethyl]urea

01.1: 9 residues within 4Å: Chain A: F.26, P.28, L.33, T.36, W.105, I.108, S.109, F.113, Y.121 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.26, A:P.28, A:F.113, A:F.113, A:Y.121 pi-Stacking: A:Y.121, A:Y.121 01.2: 9 residues within 4Å: Chain B: F.26, P.28, L.33, T.36, W.105, I.108, S.109, F.113, Y.121 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.26, B:P.28, B:F.113, B:F.113, B:Y.121 pi-Stacking: B:Y.121, B:Y.121 Halogen bonds: B:T.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cole, A.G. et al., Rational Design, Synthesis, and Structure-Activity Relationship of a Novel Isoquinolinone-Based Series of HBV Capsid Assembly Modulators Leading to the Identification of Clinical Candidate AB-836. J.Med.Chem. (2024)

Release Date

2024-09-25

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Capsid protein

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