SMTL ID : 8geu.1

Crystal structure of human cellular retinol binding protein 1 in complex with methyl({3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}methyl)[(1-methylpyrazol-4-yl)methyl]amine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x ZCF: N-methyl-1-{3-[1-(4-methylphenyl)cyclopentyl]-1,2,4-oxadiazol-5-yl}-N-[(1-methyl-1H-pyrazol-4-yl)methyl]methanamine(Non-covalent)

ZCF.1: 23 residues within 4Å: Chain A: F.17, Y.20, L.21, V.26, L.30, A.34, L.37, P.39, K.41, I.52, T.54, S.56, F.58, R.59, N.60, Y.61, M.63, G.77, I.78, W.107, Q.109, L.118, M.120 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.17, A:V.26, A:A.34, A:P.39, A:T.54, A:F.58 Hydrogen bonds: A:K.41 Water bridges: A:T.54 pi-Stacking: A:W.107

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 6 residues within 4Å: Chain A: P.2, V.3, Q.45, W.89, G.91, D.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.3, A:V.3, A:D.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plau, J. et al., Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms. Acs Chem.Biol. (2023)

Release Date

2023-10-11

Peptides

Retinol-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinol-binding protein 1

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