SMTL ID : 8gev.1

Crystal structure of human cellular retinol binding protein 1 in complex with 1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ZDK: 1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine(Non-covalent)

ZDK.1: 25 residues within 4Å: Chain A: F.17, Y.20, L.21, V.26, L.30, A.34, L.37, P.39, K.41, I.52, T.54, L.55, S.56, F.58, R.59, N.60, Y.61, M.63, L.75, G.77, I.78, W.107, Q.109, L.118, M.120 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.21, A:A.34, A:L.37, A:P.39, A:P.39, A:T.54, A:F.58, A:R.59, A:Y.61, A:I.78, A:I.78 Hydrogen bonds: A:K.41 Water bridges: A:Q.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plau, J. et al., Discovery of Nonretinoid Inhibitors of CRBP1: Structural and Dynamic Insights for Ligand-Binding Mechanisms. Acs Chem.Biol. (2023)

Release Date

2023-10-04

Peptides

Retinol-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinol-binding protein 1

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