SMTL ID : 8gol.2 (1 other biounit)

crystal structure of SulE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x IJC: 2-[(4-chloranyl-6-methoxy-pyrimidin-2-yl)carbamoylsulfamoyl]benzoic acid(Non-covalent)

IJC.1: 10 residues within 4Å: Chain A: G.78, R.150, S.209, A.210, A.234, F.257, P.258, W.296 Chain B: I.43, Y.45 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.150, A:F.257, A:W.296, B:I.43 Hydrogen bonds: A:G.78, A:S.209, A:A.210 Water bridges: A:T.235, A:T.235, A:T.235 Salt bridges: A:R.150 pi-Stacking: A:F.257 IJC.3: 11 residues within 4Å: Chain A: I.43, Y.45 Chain B: G.78, R.150, S.209, A.210, A.234, F.257, P.258, F.293, W.296 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.150, B:A.234, B:F.257, B:F.293, B:W.296, A:I.43 Hydrogen bonds: B:G.78, B:S.209, B:A.210, A:Y.45 Water bridges: B:R.150, B:T.235, B:T.235, B:T.235 pi-Stacking: B:F.257

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: N.141, S.142, K.144, F.175, M.178 Chain B: F.52, Y.53 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.141, A:N.141, A:S.142, B:Y.53 Water bridges: A:N.141, A:G.179 GOL.4: 8 residues within 4Å: Chain A: F.52, Y.53 Chain B: N.141, S.142, K.144, F.175, M.178, G.179 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.141, B:S.142, A:Y.53 Water bridges: B:N.141, B:G.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Alpha/beta fold hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Alpha/beta fold hydrolase

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