SMTL ID : 8gp0.1

crystal structure of SulE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: N.141, S.142, F.175, M.178 Chain B: F.52, Y.53 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.141, A:N.141, A:S.142, B:Y.53 Water bridges: A:N.141, A:N.141, A:G.179, A:G.179 GOL.2: 5 residues within 4Å: Chain A: E.19, F.23, F.61, Y.107, H.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.19, A:Y.107, A:Y.107 GOL.4: 9 residues within 4Å: Chain A: F.52, Y.53 Chain B: N.141, S.142, S.143, K.144, F.175, M.178, G.179 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.141, B:N.141, B:S.142, A:Y.53 GOL.5: 6 residues within 4Å: Chain A: G.27, R.28, T.29, Y.53 Chain B: D.172, K.176 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.172, B:D.172, B:K.176, A:T.29 GOL.6: 4 residues within 4Å: Chain B: P.284, K.285, N.286, K.288 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.285, B:N.286, B:N.286, B:N.286, B:K.288

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 10 residues within 4Å: Chain A: G.77, G.78, G.79, R.150, S.209, A.210, A.234, F.257 Chain B: I.43, Y.45 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.78, A:A.210, B:Y.45 Water bridges: A:S.181, A:S.181 Salt bridges: A:R.150 CIT.7: 9 residues within 4Å: Chain A: I.43, Y.45 Chain B: G.78, G.79, R.150, S.209, A.210, A.234, F.257 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.78, B:A.210, A:Y.45, A:Y.45 Water bridges: B:S.181 Salt bridges: B:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Alpha/beta fold hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha/beta fold hydrolase

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