SMTL ID : 8gre.1

F-box protein in complex with skp1(FL) and substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: H.156, A.289 Chain B: E.169, A.175, L.279 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.169, B:E.169, A:A.289 Water bridges: B:L.274, B:S.276 GOL.2: 2 residues within 4Å: Chain A: W.325, N.329 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.325, A:N.329 GOL.3: 6 residues within 4Å: Chain C: W.122, Y.176, I.219, L.267, P.287, N.289 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain C: D.352, L.353, G.354 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.352, C:G.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishio, K. et al., Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress. Sci Adv (2023)

Release Date

2023-04-26

Peptides

Citrate synthase: AB
F-box protein UCC1: C
E3 ubiquitin ligase complex SCF subunit: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Citrate synthase

F-box protein UCC1

E3 ubiquitin ligase complex SCF subunit

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