- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.28 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 23 x GOL: GLYCEROL(Non-functional Binders)
- 13 x NA: SODIUM ION(Non-functional Binders)
NA.12: 1 residues within 4Å:- Chain A: Q.171
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.171
NA.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.14: 2 residues within 4Å:- Chain A: M.226
- Ligands: PEG.30
No protein-ligand interaction detected (PLIP)NA.33: 2 residues within 4Å:- Chain A: I.125, K.126
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.125
NA.35: 1 residues within 4Å:- Chain A: K.193
No protein-ligand interaction detected (PLIP)NA.44: 1 residues within 4Å:- Ligands: PG4.47
No protein-ligand interaction detected (PLIP)NA.46: 3 residues within 4Å:- Chain B: P.74, G.75
- Ligands: SO4.56
No protein-ligand interaction detected (PLIP)NA.53: 2 residues within 4Å:- Chain B: E.28, T.34
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.28, B:T.34, B:T.34
NA.67: 2 residues within 4Å:- Chain B: E.29
- Ligands: CL.62
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.29
NA.70: 1 residues within 4Å:- Ligands: PE8.21
No protein-ligand interaction detected (PLIP)NA.71: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.72: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.73: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.15: 4 residues within 4Å:- Chain A: Y.11
- Ligands: GOL.4, PG4.27, EDO.34
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.11
PEG.16: 3 residues within 4Å:- Ligands: PEG.19, PE8.21, PG4.37
No protein-ligand interaction detected (PLIP)PEG.17: 6 residues within 4Å:- Chain A: Y.22, D.23, G.182, M.183, Y.199
- Ligands: GOL.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.183, A:M.183
PEG.18: 5 residues within 4Å:- Chain A: T.100, D.103, E.121, K.122
- Ligands: GOL.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.121
PEG.19: 4 residues within 4Å:- Chain A: D.170, Q.171
- Ligands: PEG.16, PE8.21
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.171
PEG.20: 2 residues within 4Å:- Chain A: M.183
- Ligands: GOL.10
No protein-ligand interaction detected (PLIP)PEG.30: 5 residues within 4Å:- Chain A: K.192, K.193, D.221, M.226
- Ligands: NA.14
No protein-ligand interaction detected (PLIP)PEG.39: 2 residues within 4Å:- Ligands: GOL.8, PE8.22
No protein-ligand interaction detected (PLIP)PEG.40: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PEG.57: 2 residues within 4Å:- Chain B: D.61
- Ligands: PG4.59
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.61
PEG.65: 5 residues within 4Å:- Chain B: R.58, Y.64
- Ligands: SO4.55, PG4.58, PG4.60
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.58, B:R.58, B:Y.64
- 2 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-functional Binders)(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.23: 4 residues within 4Å:- Chain A: I.116, D.117, K.122
- Ligands: PG4.24
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.116
EDO.28: 8 residues within 4Å:- Chain A: F.156, F.158, K.160, I.163, F.164, W.210, G.211, I.216
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.160
EDO.29: 1 residues within 4Å:- Chain A: T.191
No protein-ligand interaction detected (PLIP)EDO.34: 2 residues within 4Å:- Chain A: Y.11
- Ligands: PEG.15
No protein-ligand interaction detected (PLIP)- 14 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.24: 3 residues within 4Å:- Chain A: E.94, L.95
- Ligands: EDO.23
No protein-ligand interaction detected (PLIP)PG4.25: 3 residues within 4Å:- Chain A: N.86, N.87, E.90
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.86, A:N.87
PG4.26: 3 residues within 4Å:- Chain A: D.154, D.155
- Ligands: GOL.6
No protein-ligand interaction detected (PLIP)PG4.27: 7 residues within 4Å:- Chain A: Y.4, N.16, F.17, D.18, H.19
- Ligands: GOL.3, PEG.15
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.4, A:D.18, A:D.18, A:H.19
PG4.32: 2 residues within 4Å:- Chain A: Y.4
- Ligands: GOL.3
No protein-ligand interaction detected (PLIP)PG4.37: 5 residues within 4Å:- Ligands: PEG.16, PE8.21, GOL.38, GOL.42, PG4.47
No protein-ligand interaction detected (PLIP)PG4.43: 6 residues within 4Å:- Chain B: M.1, I.2, L.6, S.7, E.8, K.44
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.7, B:E.94
- Water bridges: B:K.44, B:K.44
PG4.47: 8 residues within 4Å:- Chain A: Q.171
- Chain B: M.1, E.8
- Ligands: PE8.21, PG4.37, GOL.42, NA.44, SO4.68
No protein-ligand interaction detected (PLIP)PG4.58: 4 residues within 4Å:- Chain B: E.39, R.58
- Ligands: PG4.60, PEG.65
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.58
PG4.59: 10 residues within 4Å:- Chain B: E.33, T.34, Y.35, G.36, K.37, E.39, D.61
- Ligands: SO4.54, PEG.57, PG4.60
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.39
PG4.60: 7 residues within 4Å:- Chain B: K.37, L.38, E.39
- Ligands: SO4.54, PG4.58, PG4.59, PEG.65
No protein-ligand interaction detected (PLIP)PG4.61: 1 residues within 4Å:- Ligands: SO4.56
1 PLIP interactions:1 interactions with chain B- Water bridges: B:G.75
PG4.63: 3 residues within 4Å:- Chain B: L.82
- Ligands: GOL.48, GOL.51
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.82
PG4.69: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.36: 1 residues within 4Å:- Ligands: GOL.11
No protein-ligand interaction detected (PLIP)SO4.54: 4 residues within 4Å:- Chain B: G.36, K.37
- Ligands: PG4.59, PG4.60
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.37
SO4.55: 2 residues within 4Å:- Chain B: N.62
- Ligands: PEG.65
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.62, B:N.62
SO4.56: 5 residues within 4Å:- Chain B: G.75, Q.76, N.77
- Ligands: NA.46, PG4.61
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.75, B:N.77
SO4.68: 1 residues within 4Å:- Ligands: PG4.47
No protein-ligand interaction detected (PLIP)- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chakraborty, S. et al., Structure of falcipain and human Stefin A complex. To Be Published
- Release Date
- 2023-09-13
- Peptides
- Cysteine protease falcipain-2: A
Cystatin-A: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.28 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 23 x GOL: GLYCEROL(Non-functional Binders)
- 13 x NA: SODIUM ION(Non-functional Binders)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-functional Binders)(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 14 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chakraborty, S. et al., Structure of falcipain and human Stefin A complex. To Be Published
- Release Date
- 2023-09-13
- Peptides
- Cysteine protease falcipain-2: A
Cystatin-A: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D