SMTL ID : 8gws.1

SARS-CoV-2 Mpro 1-302 c145a in complex with peptide 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x VAL- LYS- LEU- GLN- ALA- ILE- PHE- ARG: VAL-LYS-LEU-GLN-ALA-ILE-PHE-ARG(Non-covalent)

VAL-LYS-LEU-GLN-ALA-ILE-PHE-ARG.1: 24 residues within 4Å: Chain A: T.24, T.25, T.26, H.41, T.45, S.46, M.49, F.140, L.141, N.142, G.143, S.144, A.145, H.163, H.164, M.165, E.166, P.168, H.172, R.188, Q.189, T.190, A.191, Q.192 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.25, A:T.26, A:N.142, A:M.165, A:E.166 Hydrogen bonds: A:T.24, A:T.24, A:T.26, A:T.26, A:F.140, A:G.143, A:S.144, A:S.144, A:A.145, A:H.164, A:E.166, A:E.166, A:Q.189 VAL-LYS-LEU-GLN-ALA-ILE-PHE-ARG.2: 23 residues within 4Å: Chain B: T.24, T.25, T.26, H.41, T.45, S.46, F.140, L.141, N.142, G.143, S.144, A.145, H.163, H.164, M.165, E.166, L.167, P.168, H.172, R.188, Q.189, T.190, Q.192 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:T.25, B:M.165, B:E.166, B:L.167, B:Q.189, B:Q.192 Hydrogen bonds: B:T.24, B:T.24, B:T.26, B:T.26, B:F.140, B:G.143, B:S.144, B:S.144, B:A.145, B:H.164, B:E.166, B:E.166, B:Q.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., The S1'-S3' Pocket of the SARS-CoV-2 Main Protease Is Critical for Substrate Selectivity and Can Be Targeted with Covalent Inhibitors. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-08-23

Peptides

Replicase polyprotein 1ab: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Replicase polyprotein 1ab

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