SMTL ID : 8gx9.1

Crystal structure of SARS-CoV-2 RBD with P2C-1F11 and P2B-1G5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.01 Å

Oligo State

hetero-2-2-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: G.21, F.24, N.25, L.50 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.24, A:L.50 Hydrogen bonds: A:N.25 NAG.2: 3 residues within 4Å: Chain B: G.21, N.25, L.50 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.50 Hydrogen bonds: B:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Crystal structure of SARS-CoV-2 antibody P2C-1F11 and RBD. To be published

Release Date

2022-10-12

Peptides

Spike protein S1: AB
light chain of P2C-1F11: CF
heavy chain of P2C-1F11: DE
light chain of P2B-1G5: GI
heavy chain of P2B-1G5: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

F
L

D
H

E
I

G
M

I
N

H
O

J
P

Spike protein S1

light chain of P2C-1F11

heavy chain of P2C-1F11

light chain of P2B-1G5

heavy chain of P2B-1G5

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