SMTL ID : 8z2e.1

Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: E.1, F.103, Y.104, Y.105 Chain B: N.25, S.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.1, A:Y.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Q. et al., Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD. To Be Published

Release Date

2025-04-23

Peptides

Tnb04-1: A
Spike protein S1: B
1F11-H: C
1F11-L: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
H

D
L

Tnb04-1

Spike protein S1

1F11-H

1F11-L

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