SMTL ID : 8gzp.1

Cryo-EM structure of the NS5-SLA complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.720, H.722, C.736, C.855 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.720, A:H.722, A:C.736, A:C.855 ZN.2: 5 residues within 4Å: Chain A: E.445, H.449, C.454, G.455, C.457 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.445, A:H.449, A:C.454, A:C.457

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 12 residues within 4Å: Chain A: K.22, L.25, N.26, L.28, F.33, S.158, S.159, P.160, R.219, S.221 Chain B: A.2 Ligands: MG.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.22, A:L.28, A:L.28, A:L.28, A:S.158, A:R.219, A:S.221 pi-Stacking: A:F.33, A:F.33

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 4 residues within 4Å: Chain B: A.2, G.3, U.4 Ligands: GDP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osawa, T. et al., Structures of dengue virus RNA replicase complexes. Mol.Cell (2023)

Release Date

2023-08-02

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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