SMTL ID : 8gzq.1

Cryo-EM structure of the NS5-NS3-SLA complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.720, H.722, C.736, C.855 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.720, A:H.722, A:C.736, A:C.855 ZN.2: 5 residues within 4Å: Chain A: E.445, H.449, C.454, G.455, C.457 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.445, A:H.449, A:C.454, A:C.457

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 13 residues within 4Å: Chain A: L.25, N.26, L.28, F.33, S.158, S.159, P.160, E.165, R.219, S.221 Chain C: A.2, G.3, U.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:L.28, A:L.28, A:L.28, A:S.158, A:E.165, A:S.221 Salt bridges: A:R.219 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osawa, T. et al., Structures of dengue virus RNA replicase complexes. Mol.Cell (2023)

Release Date

2023-08-02

Peptides

Genome polyprotein: A
Genome polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Genome polyprotein

Genome polyprotein

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