SMTL ID : 8h0i.1

Cryo-EM structure of APOBEC3G-Vif complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.57, E.59, C.88, C.91 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:C.88, A:C.91 ZN.2: 3 residues within 4Å: Chain A: H.244, C.275, C.278 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.244, A:C.275, A:C.278 ZN.4: 5 residues within 4Å: Chain B: H.57, E.59, C.88, C.91 Ligands: CL.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:C.88, B:C.91 ZN.5: 3 residues within 4Å: Chain B: H.244, C.275, C.278 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.244, B:C.275, B:C.278

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: H.57, E.59, P.87, C.88, C.91 Ligands: ZN.1 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: H.57, E.59, P.87, C.88, C.91 Ligands: ZN.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kouno, T. et al., Structural insights into RNA bridging between HIV-1 Vif and antiviral factor APOBEC3G. Nat Commun (2023)

Release Date

2023-07-19

Peptides

APOBEC3G: AB
Viral infectivity factor: CEGI
Core binding factor beta: DFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

G
G

I
I

D
D

F
F

H
H

J
J

APOBEC3G

Viral infectivity factor

Core binding factor beta

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