- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLS: [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 6 residues within 4Å:- Chain A: I.15, E.18, L.19, K.22, E.335, F.338
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.18
- Water bridges: A:K.22, A:K.22, A:E.335
EDO.3: 2 residues within 4Å:- Chain A: P.171, E.172
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.172
- Water bridges: A:D.173
EDO.4: 5 residues within 4Å:- Chain A: A.100, Y.101, H.220, K.221, A.223
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.100
EDO.5: 4 residues within 4Å:- Chain A: H.315, G.316, F.317, V.387
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.395
EDO.6: 5 residues within 4Å:- Chain A: R.62, E.289, I.290, N.293, E.294
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.62, A:E.289, A:E.289, A:N.293, A:E.294
EDO.7: 3 residues within 4Å:- Chain A: E.135, K.154, K.166
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.162, A:K.166
- Water bridges: A:K.154
EDO.9: 6 residues within 4Å:- Chain B: I.15, E.18, L.19, K.22, E.335, F.338
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.18, B:E.18
- Water bridges: B:K.22, B:K.22, B:K.22
EDO.10: 2 residues within 4Å:- Chain B: P.171, E.172
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.172
- Water bridges: B:D.173
EDO.11: 5 residues within 4Å:- Chain B: A.100, Y.101, H.220, K.221, A.223
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.100
EDO.12: 4 residues within 4Å:- Chain B: H.315, G.316, F.317, V.387
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.395
EDO.13: 5 residues within 4Å:- Chain B: R.62, E.289, I.290, N.293, E.294
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.62, B:E.289, B:N.293, B:E.294, B:E.294
EDO.14: 3 residues within 4Å:- Chain B: E.135, K.154, K.166
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.162, B:K.166
- Water bridges: B:K.154
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikushiro, H. et al., Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum. J.Biol.Chem. (2023)
- Release Date
- 2023-08-16
- Peptides
- Serine palmitoyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLS: [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikushiro, H. et al., Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum. J.Biol.Chem. (2023)
- Release Date
- 2023-08-16
- Peptides
- Serine palmitoyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A