- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x KPU: (2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid(Non-covalent)
KPU.6: 20 residues within 4Å:- Chain A: N.52, T.112, G.113, F.114, N.117, H.138, S.140, D.181, D.210, A.212, H.213, T.241, S.243, K.244
- Chain B: G.80, S.81, M.271, F.272, S.273, A.274
20 PLIP interactions:16 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:H.138, A:A.212
- Hydrogen bonds: A:N.52, A:G.113, A:F.114, A:N.117, A:S.140, A:S.243, A:S.243, A:K.244, A:K.244, B:S.273, B:A.274
- Water bridges: A:S.185, A:S.185, B:S.81, B:S.81
- Salt bridges: A:H.138, A:K.244
- pi-Stacking: A:H.138
KPU.12: 20 residues within 4Å:- Chain A: G.80, S.81, M.271, F.272, S.273, A.274
- Chain B: N.52, T.112, G.113, F.114, N.117, H.138, S.140, D.181, D.210, A.212, H.213, T.241, S.243, K.244
21 PLIP interactions:17 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:H.138, B:A.212
- Hydrogen bonds: B:N.52, B:G.113, B:F.114, B:N.117, B:S.140, B:T.241, B:S.243, B:S.243, B:K.244, B:K.244, A:S.273, A:A.274
- Water bridges: B:S.185, B:S.185, A:S.81, A:S.81
- Salt bridges: B:H.138, B:K.244
- pi-Stacking: B:H.138
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikushiro, H. et al., Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum. J.Biol.Chem. (2023)
- Release Date
- 2023-08-16
- Peptides
- Serine palmitoyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x KPU: (2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ikushiro, H. et al., Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum. J.Biol.Chem. (2023)
- Release Date
- 2023-08-16
- Peptides
- Serine palmitoyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A