SMTL ID : 8h3f.1

Cryo-EM Structure of the KBTBD2-CRL3-CSN complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-2-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.104, H.138, H.140, D.151 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.104, A:E.104, A:H.140, A:D.151, A:D.151 ZN.2: 4 residues within 4Å: Chain J: C.55, C.58, H.61, H.93 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.55, J:C.58, J:H.93 ZN.3: 6 residues within 4Å: Chain J: C.88, H.90, F.92, C.107, D.110, W.114 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.88, J:H.90, J:C.107 ZN.4: 6 residues within 4Å: Chain J: L.65, C.66, C.69, E.79, C.81, H.95 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.69, J:C.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Dynamic molecular architecture and substrate recruitment of cullin3-RING E3 ligase CRL3 KBTBD2. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-10-11

Peptides

COP9 signalosome complex subunit 5: A
COP9 signalosome complex subunit 1: B
COP9 signalosome complex subunit 2: C
COP9 signalosome complex subunit 3: D
COP9 signalosome complex subunit 4: E
COP9 signalosome complex subunit 6: F
COP9 signalosome complex subunit 7b: G
COP9 signalosome complex subunit 8: H
Kelch repeat and BTB domain-containing protein 2: IK
E3 ubiquitin-protein ligase RBX1: J
Cullin-3: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
B

D
C

E
D

F
F

G
G

H
H

I
I

K
M

J
R

L
L

COP9 signalosome complex subunit 5

COP9 signalosome complex subunit 1

COP9 signalosome complex subunit 2

COP9 signalosome complex subunit 3

COP9 signalosome complex subunit 4

COP9 signalosome complex subunit 6

COP9 signalosome complex subunit 7b

COP9 signalosome complex subunit 8

Kelch repeat and BTB domain-containing protein 2

E3 ubiquitin-protein ligase RBX1

Cullin-3

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