SMTL ID : 8h58.1 (3 other biounits)

Crystal structure of YhaJ effector binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.139 Chain B: T.18, T.40 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.18, B:T.40 NA.2: 4 residues within 4Å: Chain A: T.12, T.18, T.40 Chain B: D.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.12, A:T.18, A:T.18 NA.3: 3 residues within 4Å: Chain C: T.18, T.40 Chain D: D.139 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:T.18, C:T.40, D:D.139 NA.4: 4 residues within 4Å: Chain C: T.136, D.139 Chain D: T.18, T.40 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.40, D:T.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M. et al., Structural basis of transcription factor YhaJ for DNT detection. Iscience (2023)

Release Date

2023-10-25

Peptides

HTH-type transcriptional regulator YhaJ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

HTH-type transcriptional regulator YhaJ

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