SMTL ID : 8h58.2 (3 other biounits)

Crystal structure of YhaJ effector binding domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-tetramer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: T.12, E.13, V.16, T.18, T.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.12, A:T.18 NA.2: 5 residues within 4Å: Chain A: D.139 Chain B: T.12, V.16, T.18, T.40 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.12, B:V.16, B:T.18, B:T.18, B:T.40 NA.3: 5 residues within 4Å: Chain C: D.139 Chain D: T.12, V.16, T.18, T.40 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.12, D:T.18, D:T.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M. et al., Structural basis of transcription factor YhaJ for DNT detection. Iscience (2023)

Release Date

2023-10-25

Peptides

HTH-type transcriptional regulator YhaJ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
E

D
F

HTH-type transcriptional regulator YhaJ

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