SMTL ID : 8hg0.1

Cryo-EM structure of SARS-CoV-2 prototype spike protein receptor-binding domain in complex with white-tailed deer ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.298 No protein-ligand interaction detected (PLIP) NAG.2: 1 residues within 4Å: Chain A: N.431 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.431, A:E.432 NAG.4: 1 residues within 4Å: Chain B: N.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.11

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.373, H.377, E.401 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.373, A:H.377, A:E.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, P. et al., Structural basis of SARS-CoV-2 binding to ACE 2 receptor of white-tailed deer, Odocoileus virginianus. To Be Published

Release Date

2023-08-30

Peptides

Angiotensin-converting enzyme: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme

Spike protein S1

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