SMTL ID : 8hh1.1

FoF1-ATPase from Bacillus PS3, 81 degrees, highATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-mer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain A: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.320, F.349, R.354, Q.422, D.423, L.424 Chain D: R.363 Ligands: MG.2 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:D.170, A:Q.172, A:Q.172, A:T.173, A:G.174, A:K.175, A:T.176, A:T.176, A:S.177, A:S.177, A:Q.422 Salt bridges: A:K.175, A:K.175, D:R.363, D:R.363 pi-Stacking: A:F.349 ATP.3: 14 residues within 4Å: Chain B: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.320, F.349, R.354, Q.422, L.424 Ligands: MG.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Q.172, B:T.173, B:G.174, B:K.175, B:T.176, B:T.176, B:S.177, B:S.177, B:Q.422 Salt bridges: B:K.175, B:K.175 ATP.5: 15 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.320, F.349, R.354, Q.422, L.424 Chain F: Y.375 Ligands: MG.6 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:T.176, C:S.177, C:S.177, C:E.320, C:Q.422, C:L.424, F:Y.375 Salt bridges: C:K.175, C:K.175 ATP.8: 19 residues within 4Å: Chain C: V.363, S.364, R.365 Chain D: G.170, G.172, V.173, G.174, K.175, T.176, V.177, E.201, R.202, E.205, Y.352, F.425, A.428, F.431, T.432 Ligands: MG.7 18 PLIP interactions: 14 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.170, D:G.172, D:V.173, D:G.174, D:G.174, D:K.175, D:T.176, D:V.177, D:E.205, C:S.364 Salt bridges: D:K.175, D:K.175, D:R.202, C:R.365, C:R.365, C:R.365 pi-Stacking: D:Y.352, D:Y.352 ATP.9: 13 residues within 4Å: Chain A: R.365 Chain E: G.170, A.171, G.172, V.173, G.174, K.175, T.176, V.177, Y.352, F.425, A.428, F.431 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:V.173, E:G.174, E:K.175, E:T.176, E:T.176, E:V.177, E:Y.352 Salt bridges: E:K.175 pi-Stacking: E:Y.352, E:Y.352 ATP.12: 19 residues within 4Å: Chain B: I.335, S.336, V.363, R.365 Chain F: G.170, A.171, G.172, V.173, G.174, K.175, T.176, V.177, E.201, R.202, Y.352, F.425, A.428, F.431 Ligands: MG.11 16 PLIP interactions: 12 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.172, F:V.173, F:G.174, F:K.175, F:T.176, F:T.176, F:V.177, B:S.336 Salt bridges: F:K.175, F:K.175, F:R.202, B:R.365, B:R.365, B:R.365 pi-Stacking: F:Y.352, F:Y.352

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.176 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.176 MG.4: 2 residues within 4Å: Chain B: T.176 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.6: 2 residues within 4Å: Chain C: T.176 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.176 MG.7: 4 residues within 4Å: Chain D: T.176, R.202, E.205 Ligands: ATP.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.176 MG.11: 4 residues within 4Å: Chain F: T.176, E.201, R.202 Ligands: ATP.12 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.176

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 4 residues within 4Å: Chain A: R.365 Chain E: R.202, N.264, R.267 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:N.264 Salt bridges: E:K.175, E:R.202, E:R.267, A:R.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, A. et al., Rotation mechanism of ATP synthases driven by ATP hydrolysis. To Be Published

Release Date

2023-07-19

Peptides

ATP synthase subunit alpha: ABC
ATP synthase subunit beta: DEF
ATP synthase gamma chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

ATP synthase subunit alpha

ATP synthase subunit beta

ATP synthase gamma chain

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