SMTL ID : 8hlr.1 (1 other biounit)

Human ADP-ribosyltransferase 1 (PARP1) catalytic domain bound to Fluzoparib (SHR3162)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 25I: Fluzoparib

25I.1: 20 residues within 4Å: Chain A: D.109, L.112, D.113, H.205, G.206, R.221, I.222, A.223, P.224, Y.232, G.237, I.238, Y.239, F.240, A.241, S.247, Y.250, E.331 Ligands: SO4.5, SO4.7 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.232, A:Y.239, A:Y.239, A:A.241, A:Y.250, A:Y.250, A:E.331 Hydrogen bonds: A:G.206, A:G.206, A:Y.239 Salt bridges: A:D.109 pi-Stacking: A:H.205, A:Y.239, A:Y.250 Halogen bonds: A:D.113

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.46, R.47 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.46, A:R.47 SO4.3: 3 residues within 4Å: Chain A: K.141, S.217, Q.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.217, A:Q.218 Salt bridges: A:K.141 SO4.4: 5 residues within 4Å: Chain A: K.246, L.327, L.328, Y.329, E.331 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.328, A:Y.329, A:Y.329, A:E.331 Salt bridges: A:K.246 SO4.5: 7 residues within 4Å: Chain A: N.110, H.205, G.206, S.207, N.211, I.215 Ligands: 25I.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.207, A:N.211 Water bridges: A:G.206 Salt bridges: A:H.205 SO4.6: 7 residues within 4Å: Chain A: E.183, R.184, E.185, G.186, E.187, C.188, Q.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.186, A:C.188, A:Q.189 SO4.7: 8 residues within 4Å: Chain A: R.221, I.222, A.223, Y.232, K.236, G.237, I.238 Ligands: 25I.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.223, A:Y.232, A:G.237, A:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Human ADP-ribosyltransferase 1 (PARP1) catalytic domain bound to Fluzoparib (SHR3162). To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 1, processed C-terminus: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 1, processed C-terminus

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