SMTL ID : 8hlr.2 (1 other biounit)

Human ADP-ribosyltransferase 1 (PARP1) catalytic domain bound to Fluzoparib (SHR3162)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 25I: Fluzoparib

25I.1: 19 residues within 4Å: Chain A: D.109, L.112, W.204, H.205, G.206, R.221, I.222, A.223, P.224, Y.232, G.237, I.238, Y.239, F.240, A.241, S.247, Y.250, E.331 Ligands: SO4.7 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.232, A:Y.239, A:A.241, A:Y.250, A:Y.250 Hydrogen bonds: A:D.109, A:D.109, A:G.206, A:G.206, A:R.221, A:Y.239 Salt bridges: A:D.109 pi-Stacking: A:H.205, A:Y.250 Halogen bonds: A:I.222

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.246, L.327, L.328, Y.329, E.331 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.328, A:Y.329, A:E.331, A:E.331 Salt bridges: A:K.246 SO4.3: 2 residues within 4Å: Chain A: P.285, K.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.286 SO4.4: 4 residues within 4Å: Chain A: M.233, H.277, A.278, S.326 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.278, A:S.326 Salt bridges: A:H.277 SO4.5: 7 residues within 4Å: Chain A: D.242, M.243, T.297, T.298, P.299, Y.329, N.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.242, A:T.297, A:N.330, A:N.330 SO4.6: 7 residues within 4Å: Chain A: A.28, Y.32, N.110, I.114, R.208, T.210, N.211 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.32, A:Y.32, A:T.210, A:T.210, A:N.211 Salt bridges: A:R.208 SO4.7: 8 residues within 4Å: Chain A: I.222, A.223, Y.232, G.235, K.236, G.237, Y.239 Ligands: 25I.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.223, A:G.237, A:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Human ADP-ribosyltransferase 1 (PARP1) catalytic domain bound to Fluzoparib (SHR3162). To Be Published

Release Date

2024-05-01

Peptides

Poly [ADP-ribose] polymerase 1, processed C-terminus: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Poly [ADP-ribose] polymerase 1, processed C-terminus

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