SMTL ID : 8hpf.1

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with fab L4.65 and L5.34

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: D.5, N.9, V.33, N.36, F.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, S. et al., Dosing interval regimen shapes potency and breadth of antibody repertoire after vaccination of SARS-CoV-2 RBD protein subunit vaccine. Cell Discov (2023)

Release Date

2023-12-20

Peptides

Spike protein S2': A
fab L4.65: B
fab L4.65: C
fab L5.34: D
fab L5.34: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

D
M

E
N

Spike protein S2'

fab L4.65

fab L4.65

fab L5.34

fab L5.34

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