SMTL ID : 8hpq.1

Cryo-EM structure of SARS-CoV-2 Omicron BA.4 S-trimer in complex with fab L4.65 and L5.34

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.325, F.353 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.353 NAG.2: 2 residues within 4Å: Chain F: N.325, F.353 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:F.353 NAG.3: 2 residues within 4Å: Chain K: N.325, F.353 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:F.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, S. et al., Dosing interval regimen shapes potency and breadth of antibody repertoire after vaccination of SARS-CoV-2 RBD protein subunit vaccine. Cell Discov (2023)

Release Date

2024-01-31

Peptides

Spike protein S2': AFK
fab L4.65: BGL
fab L4.65: CHM
fab L5.34: DIN
fab L5.34: EJO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

K
C

B
H

G
P

L
I

C
L

H
Q

M
J

D
M

I
E

N
R

E
N

J
F

O
S

Spike protein S2'

fab L4.65

fab L4.65

fab L5.34

fab L5.34

Related Entries With Identical Sequence