SMTL ID : 8hqt.1

The complex structure of COPI cargo sorting module with SARS-CoV-2 Spike KxHxx sorting motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x VAL- LYS- LEU- HIS- TYR- THR: SARS-CoV-2 Spike KxHxx motif(Non-covalent)

VAL-LYS-LEU-HIS-TYR-THR.1: 15 residues within 4Å: Chain A: R.15, K.17, Y.33, R.59, D.98, Y.99, R.101, D.117, H.141, F.142, M.144, N.188, D.206, R.272, W.274 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.99, A:W.274 Hydrogen bonds: A:R.15, A:R.59, A:R.59, A:D.98, A:R.101, A:R.101 Water bridges: A:K.17, A:K.17, A:Y.33, A:N.230 Salt bridges: A:R.15, A:K.17, A:R.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., SARS-CoV-2 spike host cell surface exposure promoted by a COPI sorting inhibitor. Acta Pharm Sin B (2023)

Release Date

2023-12-20

Peptides

Coatomer subunit beta': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coatomer subunit beta'

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