SMTL ID : 8hro.1

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Corynebacterium glutamicum ATCC13032 in complex with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: G.9, F.10, G.11, R.12, I.13, N.34, D.35, L.36, E.78, R.79, S.97, T.98, G.99, F.100, F.101, S.121, A.122, C.153, T.183, N.315, Y.319 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.13, A:Y.319 Hydrogen bonds: A:F.10, A:F.10, A:G.11, A:R.12, A:I.13, A:R.79, A:N.315 NAD.2: 20 residues within 4Å: Chain B: G.9, F.10, G.11, R.12, I.13, N.34, D.35, L.36, R.79, S.97, T.98, G.99, F.100, F.101, S.121, A.122, C.153, T.183, N.315, Y.319 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.13, B:Y.319 Hydrogen bonds: B:F.10, B:R.12, B:I.13, B:R.79, B:N.315 NAD.3: 21 residues within 4Å: Chain C: G.9, F.10, G.11, R.12, I.13, N.34, D.35, L.36, E.78, R.79, S.97, T.98, G.99, F.100, F.101, S.121, A.122, C.153, T.183, N.315, Y.319 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.13, C:Y.319 Hydrogen bonds: C:F.10, C:F.10, C:G.11, C:R.12, C:I.13, C:R.79, C:N.315 NAD.4: 20 residues within 4Å: Chain D: G.9, F.10, G.11, R.12, I.13, N.34, D.35, L.36, R.79, S.97, T.98, G.99, F.100, F.101, S.121, A.122, C.153, T.183, N.315, Y.319 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.13, D:Y.319 Hydrogen bonds: D:F.10, D:R.12, D:I.13, D:R.79, D:N.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Son, H.F. et al., Structure-Guided Protein Engineering of Glyceraldehyde-3-phosphate Dehydrogenase from Corynebacterium glutamicum for Dual NAD/NADP Cofactor Specificity. J.Agric.Food Chem. (2023)

Release Date

2023-12-06

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glyceraldehyde-3-phosphate dehydrogenase

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