SMTL ID : 8huc.1 (1 other biounit)

Crystal structure of PaIch (Pec1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: R.12, E.14, R.102, S.104, T.105, I.106, L.124, H.126 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.12, A:E.14 Water bridges: A:R.102, A:T.105 GOL.3: 7 residues within 4Å: Chain A: A.231, Y.232, R.233, L.235, R.269, G.270, D.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.271 Water bridges: A:G.86, A:G.86, A:G.270 GOL.6: 9 residues within 4Å: Chain A: W.83, R.102, L.124, H.126, E.138, H.140, I.142 Ligands: GOL.1, NO3.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.140 Water bridges: A:Q.53, A:R.81 GOL.8: 7 residues within 4Å: Chain B: R.12, E.14, S.104, T.105, I.106, L.124, H.126 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.12

8 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 7 residues within 4Å: Chain A: R.87, L.88, E.89, R.125, S.137, E.138, E.139 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.125, A:E.139 Water bridges: A:L.88, A:L.88, A:E.89, A:E.89, A:E.89 NO3.4: 7 residues within 4Å: Chain A: H.66, R.81, M.82, W.83, H.140, I.142 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.66, A:R.81, A:R.81, A:H.140 Water bridges: A:H.185, A:H.185 NO3.5: 5 residues within 4Å: Chain A: R.81, V.122, L.124, I.142, Y.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.144 NO3.7: 5 residues within 4Å: Chain B: W.49, W.83, L.124, H.126, H.140 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:W.49, B:H.126, B:H.140 Water bridges: B:Q.53, B:Q.53, B:Q.53, B:R.102, B:R.102 NO3.9: 4 residues within 4Å: Chain B: F.72, R.81, I.106, L.124 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.81 NO3.10: 6 residues within 4Å: Chain B: H.66, R.81, M.82, W.83, H.140, I.142 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.81, B:R.81, B:H.140 Water bridges: B:H.140, B:H.185 NO3.11: 9 residues within 4Å: Chain B: M.82, W.83, I.187, H.188, V.204, V.205, H.206, G.207, P.208 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.83, B:G.207 Water bridges: B:H.185, B:H.188 NO3.12: 4 residues within 4Å: Chain B: R.95, G.98, Q.130, D.131 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.95, B:R.95 Water bridges: B:D.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pramanik, A. et al., Structural and functional insights of itaconyl-CoA hydratase from Pseudomonas aeruginosa highlight a novel N-terminal hotdog fold. Febs Lett. (2024)

Release Date

2023-12-27

Peptides

MaoC_dehydrat_N domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MaoC_dehydrat_N domain-containing protein

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