SMTL ID : 8huc.2 (1 other biounit)

Crystal structure of PaIch (Pec1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: E.14, S.104, I.106, L.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.14 NO3.2: 7 residues within 4Å: Chain A: H.66, R.81, M.82, W.83, H.140, I.142 Ligands: GOL.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.66, A:R.81, A:R.81, A:H.140 Water bridges: A:W.83, A:H.140 NO3.3: 5 residues within 4Å: Chain A: S.21, R.22, N.23 Chain B: D.18, Q.19 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.18, B:D.18, B:Q.19, B:Q.19, A:R.22, A:N.23 NO3.4: 6 residues within 4Å: Chain A: R.87, L.88, E.89, S.137, E.138, E.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.89, A:S.137 NO3.5: 5 residues within 4Å: Chain A: F.32, L.167, L.173, L.213, R.216 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.216, A:R.216 Water bridges: A:F.32, A:F.32, A:F.32, A:G.33 NO3.9: 9 residues within 4Å: Chain B: M.82, W.83, H.185, I.187, H.188, V.204, H.206, G.207, P.208 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.83, B:V.205, B:G.207

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: H.39, G.40, R.95, V.96, G.98, Q.130, D.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.95, A:R.95 Water bridges: A:H.39 GOL.7: 10 residues within 4Å: Chain A: W.49, W.83, R.102, L.124, H.126, Y.128, E.138, H.140, I.142 Ligands: NO3.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.126 Water bridges: A:Q.53, A:Q.53, A:Q.53, A:R.102, A:R.102 GOL.8: 7 residues within 4Å: Chain B: R.81, W.83, R.102, L.124, H.126, H.140, I.142 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.126, B:H.140 Water bridges: B:Q.53, B:Q.53, B:Q.53, B:R.81, B:R.81, B:R.81, B:R.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pramanik, A. et al., Structural and functional insights of itaconyl-CoA hydratase from Pseudomonas aeruginosa highlight a novel N-terminal hotdog fold. Febs Lett. (2024)

Release Date

2023-12-27

Peptides

MaoC_dehydrat_N domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

MaoC_dehydrat_N domain-containing protein

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