SMTL ID : 8hyj.1

A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.451, D.453 Chain N: U.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.451, A:D.451, A:D.453, A:D.453

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain C: C.90, C.93, C.99, C.102 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.90, C:C.93, C:C.99, C:C.102 ZN.3: 4 residues within 4Å: Chain I: C.7, C.10, C.29, C.32 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.29, I:C.32 ZN.4: 4 residues within 4Å: Chain J: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.7, J:C.10, J:C.44, J:C.45 ZN.5: 4 residues within 4Å: Chain L: C.12, C.15, C.29, C.32 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.12, L:C.15, L:C.29, L:C.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H.W. et al., A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex. Nat Commun (2023)

Release Date

2023-06-21

Peptides

DNA-directed RNA polymerase V subunit 1: A
DNA-directed RNA polymerases IV and V subunit 2: B
DNA-directed RNA polymerases IV and V subunit 3B: C
DNA-directed RNA polymerases IV and V subunit 4: D
DNA-directed RNA polymerase V subunit 5A: E
DNA-directed RNA polymerases II, IV and V subunit 6A: F
DNA-directed RNA polymerase V subunit 7: G
DNA-directed RNA polymerases II and V subunit 8A: H
DNA-directed RNA polymerases II, IV and V subunit 9A: I
DNA-directed RNA polymerases II, IV and V subunit 10: J
DNA-directed RNA polymerases II, IV and V subunit 11: K
DNA-directed RNA polymerases II, IV and V subunit 12: L
Protein RNA-directed DNA methylation 3: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

P
W

DNA-directed RNA polymerase V subunit 1

DNA-directed RNA polymerases IV and V subunit 2

DNA-directed RNA polymerases IV and V subunit 3B

DNA-directed RNA polymerases IV and V subunit 4

DNA-directed RNA polymerase V subunit 5A

DNA-directed RNA polymerases II, IV and V subunit 6A

DNA-directed RNA polymerase V subunit 7

DNA-directed RNA polymerases II and V subunit 8A

DNA-directed RNA polymerases II, IV and V subunit 9A

DNA-directed RNA polymerases II, IV and V subunit 10

DNA-directed RNA polymerases II, IV and V subunit 11

DNA-directed RNA polymerases II, IV and V subunit 12

Protein RNA-directed DNA methylation 3

Related Entries With Identical Sequence