SMTL ID : 8xmd.1

Pre-translocated Pol IV transcription elongation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

9 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.56, C.59, C.67, E.68, H.70 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.59, A:C.67, A:H.70 ZN.3: 4 residues within 4Å: Chain A: H.983, H.985, C.1031, C.1044 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.983, A:H.985, A:C.1031, A:C.1044 ZN.4: 4 residues within 4Å: Chain A: C.97, C.100, C.118, C.121 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.97 ZN.5: 4 residues within 4Å: Chain B: C.1108, C.1111, C.1133, C.1136 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1108, B:C.1111, B:C.1133 ZN.6: 4 residues within 4Å: Chain C: C.90, C.93, C.99, C.102 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.90, C:C.93, C:C.99, C:C.102 ZN.7: 4 residues within 4Å: Chain I: C.76, C.79, C.103, C.108 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.76, I:C.79, I:C.103, I:C.108 ZN.8: 4 residues within 4Å: Chain I: C.7, C.10, C.29, C.32 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.29, I:C.32 ZN.9: 6 residues within 4Å: Chain J: C.7, T.9, C.10, K.12, C.44, C.45 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.10, J:C.44, J:C.45 ZN.10: 4 residues within 4Å: Chain L: C.12, C.15, C.29, C.32 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.12, L:C.15, L:C.29, L:C.32

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.447, D.449, D.451 Chain O: A.15, G.16 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.447, A:D.449, A:D.449, A:D.451, A:D.451

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, K. et al., Transcription of the Plant RNA polymerase IV is prone to backtracking. To Be Published

Release Date

2024-07-24

Peptides

DNA-directed RNA polymerase IV subunit 1: A
DNA-directed RNA polymerases IV and V subunit 2: B
DNA-directed RNA polymerases II, IV and V subunit 3: C
DNA-directed RNA polymerases IV and V subunit 4: D
DNA-directed RNA polymerases II and IV subunit 5A: E
DNA-directed RNA polymerases II, IV and V subunit 6A: F
DNA-directed RNA polymerase IV subunit 7: G
DNA-directed RNA polymerases II, IV and V subunit 8B: H
DNA-directed RNA polymerases II, IV and V subunit 9A: I
DNA-directed RNA polymerases II, IV and V subunit 10: J
DNA-directed RNA polymerases II, IV and V subunit 11: K
DNA-directed RNA polymerases II, IV and V subunit 12: L
RNA-dependent RNA polymerase 2: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

DNA-directed RNA polymerase IV subunit 1

DNA-directed RNA polymerases IV and V subunit 2

DNA-directed RNA polymerases II, IV and V subunit 3

DNA-directed RNA polymerases IV and V subunit 4

DNA-directed RNA polymerases II and IV subunit 5A

DNA-directed RNA polymerases II, IV and V subunit 6A

DNA-directed RNA polymerase IV subunit 7

DNA-directed RNA polymerases II, IV and V subunit 8B

DNA-directed RNA polymerases II, IV and V subunit 9A

DNA-directed RNA polymerases II, IV and V subunit 10

DNA-directed RNA polymerases II, IV and V subunit 11

DNA-directed RNA polymerases II, IV and V subunit 12

RNA-dependent RNA polymerase 2

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