- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 16 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: D.88, K.159
- Ligands: ADP.1, AF3.3
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.88
MG.5: 4 residues within 4Å:- Chain B: D.97, T.166
- Ligands: ADP.4, AF3.6
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.97
MG.8: 4 residues within 4Å:- Chain C: D.93, S.159
- Ligands: ADP.7, AF3.9
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.93, C:D.93
MG.11: 3 residues within 4Å:- Chain D: D.104
- Ligands: ADP.10, AF3.12
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.104, D:D.104
MG.14: 4 residues within 4Å:- Chain E: D.104, K.176
- Ligands: ADP.13, AF3.15
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.104
MG.17: 3 residues within 4Å:- Chain F: D.90
- Ligands: ADP.16, AF3.18
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.90, F:D.90
MG.20: 3 residues within 4Å:- Chain G: D.92
- Ligands: ADP.19, AF3.21
No protein-ligand interaction detected (PLIP)MG.23: 4 residues within 4Å:- Chain H: D.99, K.171
- Ligands: ADP.22, AF3.24
No protein-ligand interaction detected (PLIP)MG.26: 4 residues within 4Å:- Chain I: D.88, K.159
- Ligands: ADP.25, AF3.27
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:D.88
MG.29: 4 residues within 4Å:- Chain J: D.97, T.166
- Ligands: ADP.28, AF3.30
No protein-ligand interaction detected (PLIP)MG.32: 6 residues within 4Å:- Chain K: D.93, S.159, T.162, K.163
- Ligands: ADP.31, AF3.33
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:D.93
MG.35: 4 residues within 4Å:- Chain L: D.104, G.105
- Ligands: ADP.34, AF3.36
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:D.104, L:D.104
MG.38: 2 residues within 4Å:- Chain M: D.104
- Ligands: ADP.37
1 PLIP interactions:1 interactions with chain M- Metal complexes: M:D.104
MG.41: 4 residues within 4Å:- Chain N: D.90, K.159
- Ligands: ADP.40, AF3.42
No protein-ligand interaction detected (PLIP)MG.44: 5 residues within 4Å:- Chain O: D.92, K.166, D.391
- Ligands: ADP.43, AF3.45
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:D.92
MG.47: 3 residues within 4Å:- Chain P: S.170
- Ligands: ADP.46, AF3.48
No protein-ligand interaction detected (PLIP)- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.3: 9 residues within 4Å:- Chain A: D.57, G.58, G.87, D.88, T.90, K.159, D.394
- Ligands: ADP.1, MG.2
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.394
AF3.6: 9 residues within 4Å:- Chain B: N.65, D.66, D.97, T.99, T.100, K.170, D.392
- Ligands: ADP.4, MG.5
No protein-ligand interaction detected (PLIP)AF3.9: 9 residues within 4Å:- Chain C: D.62, G.63, G.92, D.93, G.94, T.95, K.163
- Ligands: ADP.7, MG.8
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.93
AF3.12: 8 residues within 4Å:- Chain D: D.73, D.104, T.106, S.173, K.174, D.407
- Ligands: ADP.10, MG.11
No protein-ligand interaction detected (PLIP)AF3.15: 9 residues within 4Å:- Chain E: N.72, D.73, D.104, G.105, T.106, T.107, K.176
- Ligands: ADP.13, MG.14
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.73
AF3.18: 11 residues within 4Å:- Chain F: K.58, D.59, G.60, D.90, G.91, T.92, T.93, K.159, D.393
- Ligands: ADP.16, MG.17
No protein-ligand interaction detected (PLIP)AF3.21: 9 residues within 4Å:- Chain G: N.60, D.92, G.93, T.94, T.95, K.166, D.391
- Ligands: ADP.19, MG.20
No protein-ligand interaction detected (PLIP)AF3.24: 8 residues within 4Å:- Chain H: D.68, A.69, D.99, T.101, K.171, D.394
- Ligands: ADP.22, MG.23
No protein-ligand interaction detected (PLIP)AF3.27: 9 residues within 4Å:- Chain I: D.57, G.58, G.87, T.90, T.91, K.159, D.394
- Ligands: ADP.25, MG.26
No protein-ligand interaction detected (PLIP)AF3.30: 7 residues within 4Å:- Chain J: D.66, D.97, T.99, T.100, K.170
- Ligands: ADP.28, MG.29
No protein-ligand interaction detected (PLIP)AF3.33: 7 residues within 4Å:- Chain K: D.62, D.93, G.94, T.95, K.163
- Ligands: ADP.31, MG.32
No protein-ligand interaction detected (PLIP)AF3.36: 9 residues within 4Å:- Chain L: N.72, D.73, D.104, T.106, S.173, K.174, D.407
- Ligands: ADP.34, MG.35
No protein-ligand interaction detected (PLIP)AF3.39: 10 residues within 4Å:- Chain M: N.72, D.73, G.74, D.104, G.105, T.106, T.107, K.176, D.404
- Ligands: ADP.37
No protein-ligand interaction detected (PLIP)AF3.42: 11 residues within 4Å:- Chain N: K.58, D.59, G.60, D.90, G.91, T.92, T.93, K.159, D.393
- Ligands: ADP.40, MG.41
No protein-ligand interaction detected (PLIP)AF3.45: 8 residues within 4Å:- Chain O: N.60, D.61, G.93, T.94, K.166, D.391
- Ligands: ADP.43, MG.44
No protein-ligand interaction detected (PLIP)AF3.48: 7 residues within 4Å:- Chain P: D.68, D.99, T.101, K.171, D.394
- Ligands: ADP.46, MG.47
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle. Nat Commun (2024)
- Release Date
- 2024-01-31
- Peptides
- T-complex protein 1 subunit alpha: AI
T-complex protein 1 subunit beta: BJ
T-complex protein 1 subunit gamma: CK
T-complex protein 1 subunit delta: DL
T-complex protein 1 subunit epsilon: EM
T-complex protein 1 subunit zeta: FN
T-complex protein 1 subunit eta: GO
T-complex protein 1 subunit theta: HP
Phosducin-like protein 3: QR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AI
IB
BJ
JC
CK
KD
DL
LE
EM
MF
FN
NG
GO
OH
HP
PQ
QR
R
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle. Nat Commun (2024)
- Release Date
- 2024-01-31
- Peptides
- T-complex protein 1 subunit alpha: AI
T-complex protein 1 subunit beta: BJ
T-complex protein 1 subunit gamma: CK
T-complex protein 1 subunit delta: DL
T-complex protein 1 subunit epsilon: EM
T-complex protein 1 subunit zeta: FN
T-complex protein 1 subunit eta: GO
T-complex protein 1 subunit theta: HP
Phosducin-like protein 3: QR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AI
IB
BJ
JC
CK
KD
DL
LE
EM
MF
FN
NG
GO
OH
HP
PQ
QR
R