SMTL ID : 8i87.1

Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain B: N.468, I.507 Chain K: U.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:I.507 MG.2: 6 residues within 4Å: Chain D: K.263, N.468, I.507 Chain N: U.1, G.2, A.3 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain E: N.468, I.507 Chain O: U.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:I.507 MG.4: 6 residues within 4Å: Chain H: K.263, N.468, I.507 Chain J: U.1, G.2, A.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Structural insights into mechanisms of Argonaute protein-associated NADase activation in bacterial immunity. Cell Res. (2023)

Release Date

2023-07-19

Peptides

TIR domain-containing protein: ACFG
Piwi domain-containing protein: BDEH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

F
G

G
O

B
B

D
D

E
F

H
T

TIR domain-containing protein

Piwi domain-containing protein

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