SMTL ID : 8i8p.1

Crystal structure of the complex of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with Dephosphocoenzyme-A at 2.19 A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.19, S.130 Ligands: COD.2 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: H.19, S.130 Ligands: COD.7 No protein-ligand interaction detected (PLIP)

2 x COD: DEPHOSPHO COENZYME A(Non-covalent)

COD.2: 21 residues within 4Å: Chain A: Y.8, P.9, G.10, T.11, F.12, G.18, H.19, L.22, K.43, F.71, G.73, L.74, L.75, R.89, G.90, D.96, N.107, P.121, Y.125, I.128 Ligands: MG.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.8, A:T.11, A:T.11, A:F.12, A:K.43, A:L.75, A:R.89, A:G.90, A:G.90, A:Y.125 Water bridges: A:D.13, A:T.16, A:V.76, A:S.130, A:S.130, A:S.130 Salt bridges: A:H.19, A:R.89 COD.7: 21 residues within 4Å: Chain B: Y.8, P.9, G.10, T.11, F.12, G.18, H.19, L.22, K.43, F.71, G.73, L.74, L.75, R.89, G.90, D.96, N.107, P.121, Y.125, I.128 Ligands: MG.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:T.11, B:T.11, B:F.12, B:K.43, B:L.75, B:R.89, B:G.90, B:G.90, B:Y.125 Water bridges: B:T.11, B:D.13, B:V.76, B:S.130, B:S.130 Salt bridges: B:H.19, B:R.89

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: T.131, R.134 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.138 Salt bridges: A:R.134 SO4.4: 4 residues within 4Å: Chain A: G.40, H.41, H.42, K.43 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.40, A:H.41, A:H.42 Water bridges: A:G.73 Salt bridges: A:K.43 SO4.8: 2 residues within 4Å: Chain B: T.131, R.134 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.135 Salt bridges: B:R.134 SO4.9: 4 residues within 4Å: Chain B: G.40, H.41, H.42, K.43 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.40, B:H.41, B:H.42, B:H.42 Water bridges: B:G.73 Salt bridges: B:K.43

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: T.11, T.131, R.134 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: T.11, T.131, R.134 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmad, N. et al., Crystal structure of the complex of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with Dephosphocoenzyme-A at 2.19 A resolution. To Be Published

Release Date

2023-04-12

Peptides

Phosphopantetheine adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphopantetheine adenylyltransferase

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