SMTL ID : 8i9u.1

Human TRiC-PhLP2A complex in the open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-mer

Ligands

10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 7 residues within 4Å: Chain A: L.36, G.37, P.38, D.88, G.89, T.90, T.91 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.37, A:G.89, A:T.90, A:T.90, A:T.91, A:T.91 ADP.2: 12 residues within 4Å: Chain C: L.41, G.42, P.43, D.93, G.94, T.95, T.96, G.411, V.480, G.482, I.495, E.497 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.42, C:D.93, C:G.94, C:T.95, C:T.96, C:T.96, C:T.96, C:T.96, C:G.411, C:G.482, C:E.497, C:E.497 ADP.3: 9 residues within 4Å: Chain D: S.51, L.52, G.53, D.104, G.105, T.107, G.425, L.465, V.495 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.53, D:G.105 ADP.4: 7 residues within 4Å: Chain F: L.38, T.93, T.158, A.411, G.412, L.451, V.494 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:T.93, F:T.93, F:T.158, F:T.158, F:A.411, F:G.412 ADP.5: 11 residues within 4Å: Chain H: Y.47, P.49, D.99, G.100, T.101, M.169, S.170, G.412, M.492, I.497, D.499 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:Y.47, H:G.100, H:T.101, H:N.102, H:S.170, H:D.499, H:K.504 Salt bridges: H:K.171 ADP.6: 8 residues within 4Å: Chain I: L.36, G.37, P.38, D.88, G.89, T.90, T.91, G.412 5 PLIP interactions: 5 interactions with chain I Hydrogen bonds: I:G.37, I:G.89, I:T.90, I:T.91, I:T.91 ADP.7: 12 residues within 4Å: Chain K: L.41, G.42, P.43, D.93, G.94, T.95, T.96, G.411, V.480, G.482, I.495, E.497 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:G.42, K:G.94, K:T.95, K:T.96, K:T.96, K:T.96, K:G.411, K:G.482, K:E.497 ADP.8: 9 residues within 4Å: Chain L: S.51, L.52, G.53, D.104, G.105, T.107, G.425, L.465, V.495 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:G.53, L:D.104, L:G.105 ADP.9: 8 residues within 4Å: Chain N: L.38, T.93, T.158, A.411, G.412, I.447, L.451, V.494 4 PLIP interactions: 4 interactions with chain N Hydrogen bonds: N:T.158, N:T.158, N:A.411, N:G.412 ADP.10: 11 residues within 4Å: Chain P: Y.47, P.49, D.99, G.100, T.101, M.169, S.170, G.412, M.492, I.497, D.499 9 PLIP interactions: 9 interactions with chain P Hydrogen bonds: P:Y.47, P:D.99, P:G.100, P:T.101, P:N.102, P:S.170, P:D.499, P:K.504 Salt bridges: P:K.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J. et al., A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle. Nat Commun (2024)

Release Date

2024-01-17

Peptides

T-complex protein 1 subunit alpha: AI
T-complex protein 1 subunit beta: BJ
T-complex protein 1 subunit gamma: CK
T-complex protein 1 subunit delta: DL
T-complex protein 1 subunit epsilon: EM
T-complex protein 1 subunit zeta: FN
T-complex protein 1 subunit eta: GO
T-complex protein 1 subunit theta: HP
Phosducin-like protein 3: QR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

I
I

B
B

J
J

C
C

K
K

D
D

L
L

E
E

M
M

F
F

N
N

G
G

O
O

H
H

P
P

Q
Q

R
R

T-complex protein 1 subunit alpha

T-complex protein 1 subunit beta

T-complex protein 1 subunit gamma

T-complex protein 1 subunit delta

T-complex protein 1 subunit epsilon

T-complex protein 1 subunit zeta

T-complex protein 1 subunit eta

T-complex protein 1 subunit theta

Phosducin-like protein 3

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