SMTL ID : 8idm.3 (2 other biounits)

Crystal structure of nanobody VHH-227 with nanobody VHH-T71 and MERS-CoV RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.121 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.44, T.46, K.47, K.221 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.221 Hydrogen bonds: A:N.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Idoudi, F. et al., Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity. To Be Published

Release Date

2024-02-28

Peptides

Spike protein S1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Spike protein S1

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