SMTL ID : 8ido.2 (1 other biounit)

Crystal structure of nanobody VHH-T148 with MERS-CoV RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 11 residues within 4Å: Chain A: N.44, T.46, K.47, K.221, L.222 Chain B: Q.1, Y.29, V.100, D.117, Y.118, W.119 2 PLIP interactions: 2 interactions with chain B Water bridges: B:M.116, B:D.117, B:D.117 Hydrogen bonds: B:Y.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, L. et al., Structures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein. To Be Published

Release Date

2024-02-28

Peptides

Spike protein S1: A
VHH-T148: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Spike protein S1

VHH-T148

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