SMTL ID : 8ieq.1

Cryo-EM structure of G-protein free GPR156

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 01: [(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate(Non-covalent)

01.1: 26 residues within 4Å: Chain A: T.98, L.124, L.127, T.131, W.183, I.189, F.215, C.216, A.217, S.218, S.221, I.225, I.228, W.229, K.232, G.233, L.236, L.267, A.271, L.274, T.278, R.279, I.296, C.299, T.300, I.303 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.98, A:T.131, A:W.183, A:I.225, A:I.228, A:W.229, A:W.229, A:K.232, A:K.232, A:L.236, A:L.267, A:L.267, A:A.271, A:L.274, A:I.296, A:I.303 Hydrogen bonds: A:S.221 Salt bridges: A:R.279 pi-Cation interactions: A:F.215 01.2: 21 residues within 4Å: Chain B: T.98, L.124, L.127, T.131, W.183, F.215, A.217, S.218, S.221, I.225, I.228, W.229, K.232, G.233, L.267, A.271, L.274, T.278, R.279, C.299, T.300 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.98, B:L.124, B:L.127, B:L.127, B:T.131, B:W.183, B:W.183, B:I.225, B:I.228, B:W.229, B:W.229, B:A.271, B:L.274 Hydrogen bonds: B:S.218, B:S.221 Salt bridges: B:R.279 01.3: 23 residues within 4Å: Chain C: T.98, L.124, L.127, T.131, W.183, I.189, F.215, C.216, A.217, S.218, S.221, I.225, W.229, K.232, G.233, L.267, A.271, L.274, T.278, R.279, I.296, C.299, T.300 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:T.98, C:L.127, C:T.131, C:W.183, C:I.225, C:W.229, C:W.229, C:K.232, C:A.271, C:L.274, C:I.296 Hydrogen bonds: C:S.218, C:S.221 Salt bridges: C:R.279 pi-Cation interactions: C:F.215 01.4: 24 residues within 4Å: Chain D: T.98, L.124, L.127, T.131, F.135, W.183, F.215, A.217, S.218, S.221, I.225, I.228, W.229, K.232, G.233, L.236, L.267, A.271, L.274, T.278, R.279, I.296, T.300, I.303 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:T.98, D:L.124, D:L.127, D:L.127, D:T.131, D:F.135, D:W.183, D:I.225, D:I.228, D:W.229, D:W.229, D:L.236, D:A.271, D:L.274, D:I.296, D:I.303 Hydrogen bonds: D:S.218, D:S.221 Salt bridges: D:R.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, J. et al., Constitutive activation mechanism of a class C GPCR. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-02-14

Peptides

Probable G-protein coupled receptor 156: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Probable G-protein coupled receptor 156

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