SMTL ID : 8ifo.1 (1 other biounit)

Crystal structure of estrogen related receptor-gamma DNA binding domain complexed with Pla2g12b promoter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.6, C.9, C.23, C.26 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:C.23, A:C.26 ZN.2: 4 residues within 4Å: Chain A: C.42, C.48, C.58, C.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.48, A:C.58, A:C.61 ZN.3: 1 residues within 4Å: Chain A: K.3 No protein-ligand interaction detected (PLIP) ZN.4: 4 residues within 4Å: Chain B: C.42, C.48, C.58, C.61 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.48, B:C.58, B:C.61 ZN.5: 4 residues within 4Å: Chain B: C.6, C.9, C.23, C.26 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:C.23, B:C.26

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.6: 4 residues within 4Å: Chain B: P.2, R.4, G.15, Y.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.15 MLI.7: 5 residues within 4Å: Chain C: G.10, G.11, T.12 Chain D: C.8, T.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhen, X. et al., ERR gamma-DBD undergoes dimerization and conformational rearrangement upon binding to the downstream site of the DR1 element. Biochem.Biophys.Res.Commun. (2023)

Release Date

2023-03-29

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estrogen-related receptor gamma

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