SMTL ID : 8ifo.2 (1 other biounit)

Crystal structure of estrogen related receptor-gamma DNA binding domain complexed with Pla2g12b promoter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.42, C.48, C.58, C.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.48, A:C.58, A:C.61 ZN.2: 4 residues within 4Å: Chain A: C.6, C.9, C.23, C.26 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:C.23, A:C.26

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.3: 7 residues within 4Å: Chain A: N.46, E.47, C.48, C.61, M.64, K.65, K.68 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.65 Salt bridges: A:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhen, X. et al., ERR gamma-DBD undergoes dimerization and conformational rearrangement upon binding to the downstream site of the DR1 element. Biochem.Biophys.Res.Commun. (2023)

Release Date

2023-03-29

Peptides

Estrogen-related receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Estrogen-related receptor gamma

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