SMTL ID : 8j8g.1

Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and cidofovir diphosphate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x TXJ: [(2S)-1-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-propan-2-yl]oxymethyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphinic acid(Non-covalent)

TXJ.1: 14 residues within 4Å: Chain A: D.572, Y.573, S.575, L.576, Y.577, R.657, K.684, I.685, N.688, D.776 Chain D: T.24 Chain E: G.14, A.15 Ligands: CA.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.575, A:L.576, A:N.688, A:N.688, A:N.688 Salt bridges: A:R.657, A:K.684, A:K.684

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.189, E.191, D.485 Ligands: CA.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.189, A:E.191, A:D.485 CA.3: 3 residues within 4Å: Chain A: D.189, I.190 Ligands: CA.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.189 CA.4: 5 residues within 4Å: Chain A: D.572, Y.573, N.574, D.776 Ligands: TXJ.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.572, A:Y.573, A:D.776

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Structural basis of human mpox viral DNA replication inhibition by brincidofovir and cidofovir. Int.J.Biol.Macromol. (2024)

Release Date

2024-05-08

Peptides

DNA polymerase: A
E4R: B
DNA polymerase processivity factor component A20: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase

E4R

DNA polymerase processivity factor component A20

Related Entries With Identical Sequence