SMTL ID : 8jd0.1

Cryo-EM structure of mGlu2-mGlu3 heterodimer in presence of NAM563

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: F.193, N.195 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.193 NAG.8: 2 residues within 4Å: Chain B: F.216, N.218 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.216

1 x J9R: 4-(1-methylpyrazol-4-yl)-7-[[(2~{S})-2-(trifluoromethyl)morpholin-4-yl]methyl]quinoline-2-carboxamide(Non-covalent)

J9R.2: 10 residues within 4Å: Chain A: L.631, G.632, F.635, D.717, M.720, S.723, N.727, T.761, F.772, M.786 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.631, A:F.635 Hydrogen bonds: A:N.727

9 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain A: T.625, L.683, V.687, L.690 Chain B: V.648, L.655 Ligands: CLR.4, CLR.6, CLR.11 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.683, A:V.687, B:L.655 CLR.4: 8 residues within 4Å: Chain A: A.622, L.626, L.629 Chain B: V.710, W.715 Ligands: CLR.3, CLR.5, CLR.12 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.710, B:V.710, B:W.715 CLR.5: 4 residues within 4Å: Chain A: V.637, V.672, L.676 Ligands: CLR.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.676 CLR.6: 8 residues within 4Å: Chain A: A.677, L.684 Chain B: F.629 Ligands: CLR.3, CLR.10, CLR.11, CLR.12, CLR.13 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.684, B:F.629 CLR.9: 4 residues within 4Å: Chain B: F.639, F.640, A.643 Ligands: CLR.10 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.639, B:F.639, B:F.640, B:F.640, B:A.643 CLR.10: 6 residues within 4Å: Chain B: F.640, V.648 Ligands: CLR.6, CLR.9, CLR.11, CLR.13 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.640, B:V.648 CLR.11: 10 residues within 4Å: Chain B: L.633, F.640, L.652, G.656, F.699, L.706 Ligands: CLR.3, CLR.6, CLR.10, CLR.12 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.633, B:L.633, B:F.640, B:L.652, B:L.706 CLR.12: 8 residues within 4Å: Chain A: L.676, L.683 Chain B: E.622, F.629 Ligands: CLR.4, CLR.6, CLR.11, CLR.13 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:E.622, B:F.629, A:L.683 CLR.13: 11 residues within 4Å: Chain A: S.670, A.673 Chain B: F.607, N.611, Y.625, L.628, F.629, G.632 Ligands: CLR.6, CLR.10, CLR.12 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:A.673, B:F.607, B:Y.625, B:Y.625 Hydrogen bonds: A:S.670, B:N.611

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.7: 10 residues within 4Å: Chain B: R.73, R.77, S.158, Y.159, S.160, A.181, S.182, T.183, Y.231, D.310 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:A.181 Hydrogen bonds: B:S.158, B:S.160, B:T.183, B:D.310 Salt bridges: B:R.73, B:R.77, B:K.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Structural insights into dimerization and activation of the mGlu2-mGlu3 and mGlu2-mGlu4 heterodimers. Cell Res. (2023)

Release Date

2023-06-21

Peptides

Metabotropic glutamate receptor 2,Peptidyl-prolyl cis-trans isomerase FKBP1A: A
Metabotropic glutamate receptor 3,Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

B
3

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 2,Peptidyl-prolyl cis-trans isomerase FKBP1A

Metabotropic glutamate receptor 3,Serine/threonine-protein kinase mTOR

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