SMTL ID : 8jfk.1

PhK holoenzyme in inactive state, muscle isoform

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

8 x FAR: FARNESYL(Covalent)

FAR.1: 13 residues within 4Å: Chain A: N.1013, E.1015, V.1082, P.1089, C.1090 Chain D: V.1005, I.1008, V.1009, N.1013, L.1060, T.1070, M.1074 Ligands: FAR.4 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:V.1005, D:I.1008, D:V.1009, D:L.1060, D:T.1070, A:V.1082 FAR.2: 13 residues within 4Å: Chain B: K.1081, L.1137, A.1138, I.1140, E.1141, H.1143, S.1144, I.1145, A.1207, A.1208, V.1211, C.1220 Chain P: R.330 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain P Hydrophobic interactions: B:L.1137, B:I.1140, B:E.1141, B:A.1208, B:V.1211, B:V.1211, P:R.330 FAR.3: 14 residues within 4Å: Chain C: V.1078, K.1081, L.1134, L.1137, A.1138, E.1141, H.1143, S.1144, I.1145, A.1207, A.1208, V.1211, C.1220 Chain J: R.330 9 PLIP interactions: 1 interactions with chain J, 8 interactions with chain C Hydrophobic interactions: J:R.330, C:V.1078, C:L.1137, C:L.1137, C:A.1138, C:E.1141, C:V.1211, C:V.1211, C:V.1211 FAR.4: 10 residues within 4Å: Chain A: V.1009, R.1012, N.1013, C.1066, T.1070 Chain D: N.1013, L.1016, C.1090, I.1092 Ligands: FAR.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:V.1009, A:R.1012, A:T.1070, D:L.1016, D:I.1092 FAR.5: 12 residues within 4Å: Chain E: N.1013, E.1015, L.1016, M.1074, C.1090, I.1092 Chain G: I.1008, R.1012, N.1013, T.1070, M.1074 Ligands: FAR.7 5 PLIP interactions: 2 interactions with chain G, 3 interactions with chain E Hydrophobic interactions: G:I.1008, G:I.1008, E:E.1015, E:L.1016, E:I.1092 FAR.6: 11 residues within 4Å: Chain F: K.1081, L.1134, L.1137, A.1138, I.1140, E.1141, A.1207, A.1208, V.1211, C.1220 Chain N: R.330 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain N Hydrophobic interactions: F:K.1081, F:L.1137, F:L.1137, F:A.1138, F:I.1140, F:A.1208, F:V.1211, F:V.1211, N:R.330 FAR.7: 11 residues within 4Å: Chain E: I.1008, V.1009, R.1012, L.1060, C.1066, T.1070 Chain G: N.1013, L.1016, V.1082, C.1090 Ligands: FAR.5 6 PLIP interactions: 3 interactions with chain E, 3 interactions with chain G Hydrophobic interactions: E:I.1008, E:V.1009, E:L.1060, G:L.1016, G:V.1082, G:V.1082 FAR.8: 16 residues within 4Å: Chain H: V.1078, K.1081, L.1134, L.1137, A.1138, I.1140, E.1141, H.1143, S.1144, I.1145, A.1207, A.1208, V.1211, S.1218, C.1220 Chain L: R.330 10 PLIP interactions: 9 interactions with chain H, 1 interactions with chain L Hydrophobic interactions: H:V.1078, H:L.1137, H:A.1138, H:I.1140, H:E.1141, H:A.1208, H:V.1211, H:V.1211, H:V.1211, L:R.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Architecture and activation of human muscle phosphorylase kinase. Nat Commun (2024)

Release Date

2024-04-03

Peptides

Phosphorylase b kinase regulatory subunit beta: ADEG
Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform: BCFH
Calmodulin-1: IKMO
Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform: JLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
N

E
J

G
F

B
M

C
A

F
I

H
E

I
D

K
H

M
L

O
P

J
C

L
G

N
K

P
O

Phosphorylase b kinase regulatory subunit beta

Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform

Calmodulin-1

Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform

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