SMTL ID : 8jp2.1

Crystal structure of AKR1C1 in complex with DFV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, H.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, L.306 Ligands: DFV.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.306 Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:S.166, A:N.167, A:N.167, A:S.217, A:L.219, A:S.221, A:H.222, A:K.270, A:Y.272, A:Q.279, A:N.280 Water bridges: A:A.218, A:A.218, A:S.221, A:H.222, A:H.222, A:K.270, A:R.276, A:Q.279, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x DFV: 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE(Non-covalent)

DFV.2: 9 residues within 4Å: Chain A: Y.24, L.54, Y.55, H.117, H.222, W.227, L.306, L.308 Ligands: NAP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.24, A:Y.24, A:L.54, A:L.54, A:Y.55, A:W.227, A:L.306, A:L.306, A:L.308 Hydrogen bonds: A:Y.55 pi-Stacking: A:W.227, A:W.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Inhibition of AKR1Cs by liquiritigenin and the structural basis. Chem.Biol.Interact. (2023)

Release Date

2024-04-24

Peptides

Aldo-keto reductase family 1 member C1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C1

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