SMTL ID : 8jr1.1

Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-9-1-mer

Ligands

7 x UTI: (1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol(Non-covalent)

UTI.1: 10 residues within 4Å: Chain D: E.61, Y.64, F.65, L.68 Chain E: L.59, A.62, A.63, I.66 Chain J: I.215 Ligands: UTI.2 6 PLIP interactions: 4 interactions with chain D, 1 interactions with chain E, 1 interactions with chain J Hydrophobic interactions: D:E.61, D:F.65, D:L.68, E:I.66, J:I.215 Salt bridges: D:E.61 UTI.2: 9 residues within 4Å: Chain E: E.61, A.62, Y.64, F.65, L.68 Chain F: A.62, A.63, I.66 Ligands: UTI.1 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:E.61, E:F.65, E:L.68 Hydrogen bonds: E:E.61 Salt bridges: E:E.61 UTI.3: 10 residues within 4Å: Chain F: G.58, E.61, A.62, Y.64, F.65, L.68 Chain G: A.62, A.63, I.66 Ligands: UTI.4 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:I.66 Salt bridges: F:E.61 UTI.4: 9 residues within 4Å: Chain G: E.61, Y.64, F.65, L.68 Chain H: A.62, A.63, I.66 Ligands: UTI.3, UTI.5 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: G:E.61, G:F.65, G:F.65, H:I.66 Salt bridges: G:E.61 UTI.5: 8 residues within 4Å: Chain H: E.61, Y.64, F.65 Chain I: L.59, A.62, A.63, I.66 Ligands: UTI.4 5 PLIP interactions: 5 interactions with chain H Hydrophobic interactions: H:E.61, H:F.65, H:F.65, H:F.65 Salt bridges: H:E.61 UTI.6: 8 residues within 4Å: Chain A: A.62, A.63, I.66 Chain I: E.61, A.62, Y.64, F.65, L.68 7 PLIP interactions: 6 interactions with chain I, 1 interactions with chain A Hydrophobic interactions: I:E.61, I:F.65, I:F.65, I:F.65, I:F.65, A:I.66 Salt bridges: I:E.61 UTI.7: 10 residues within 4Å: Chain A: E.61, Y.64, F.65, L.68 Chain B: A.62, A.63, I.66 Chain J: P.170, I.171, V.174 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:E.61, A:F.65, A:F.65, A:F.65, A:L.68, B:I.66 Salt bridges: A:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Inhibition of M. tuberculosis and human ATP synthase by BDQ and TBAJ-587. Nature (2024)

Release Date

2024-05-01

Peptides

ATP synthase subunit c: ABCDEFGHI
ATP synthase subunit a: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
7

H
8

I
9

J
a

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit c

ATP synthase subunit a

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