SMTL ID : 8ju6.1

Structure of human TRPV4 with antagonist GSK279

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XPW: 1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile(Non-covalent)

XPW.1: 15 residues within 4Å: Chain A: F.471, N.474, S.477, Y.478, L.523, F.524, T.527, D.531, D.546, Y.553, Y.591, F.592, D.743, I.744, S.747 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.523, A:Y.553, A:Y.553, A:Y.591, A:Y.591, A:I.744 XPW.2: 12 residues within 4Å: Chain B: F.471, N.474, S.477, Y.478, F.524, T.527, Y.553, Y.591, F.592, D.743, I.744, S.747 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.553, B:Y.591, B:I.744, B:I.744 XPW.3: 14 residues within 4Å: Chain C: F.471, N.474, S.477, Y.478, L.523, F.524, T.527, D.531, Y.553, Y.591, F.592, D.743, I.744, S.747 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.523, C:Y.553, C:Y.591, C:I.744 XPW.4: 14 residues within 4Å: Chain D: F.471, N.474, S.477, Y.478, L.523, F.524, T.527, D.531, Y.553, Y.591, F.592, D.743, I.744, S.747 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.523, D:Y.553, D:Y.591, D:I.744

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, J. et al., Structural Pharmacology of TRPV4 Antagonists. Adv Sci (2024)

Release Date

2024-05-08

Peptides

Transient receptor potential cation channel subfamily V member 4,3C-GFP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4,3C-GFP

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