SMTL ID : 8jwl.1

The first purified state crystal structure of AKRtyl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain C: G.39, T.40, M.41, N.42, D.68, Y.73, K.105, H.150, S.180, N.181, Q.206, W.234, S.235, P.236, L.237, H.238, G.239, G.240, R.255, R.256, A.257, G.290, I.307, G.309, R.311, Q.315, S.318, A.319 Chain F: W.351 33 PLIP interactions: 33 interactions with chain C Hydrophobic interactions: C:W.234, C:W.234 Hydrogen bonds: C:T.40, C:M.41, C:N.42, C:D.68, C:S.180, C:N.181, C:Q.206, C:S.235, C:L.237, C:G.239, C:G.240, C:R.256, C:R.256, C:A.257, C:G.309, C:G.309, C:Q.315, C:S.318, C:S.318 Water bridges: C:N.42, C:N.42, C:Y.73, C:S.235, C:G.240, C:K.248, C:K.248, C:K.248, C:G.309 Salt bridges: C:R.256, C:R.256, C:R.311 NDP.2: 29 residues within 4Å: Chain A: W.351 Chain H: G.39, T.40, M.41, N.42, D.68, Y.73, K.105, H.150, S.180, N.181, Q.206, W.234, S.235, P.236, L.237, H.238, G.239, G.240, R.255, R.256, A.257, G.290, I.307, G.309, R.311, Q.315, S.318, A.319 29 PLIP interactions: 29 interactions with chain H Hydrophobic interactions: H:W.234, H:W.234 Hydrogen bonds: H:T.40, H:M.41, H:N.42, H:D.68, H:D.68, H:Y.73, H:S.180, H:N.181, H:Q.206, H:S.235, H:L.237, H:G.239, H:G.240, H:R.256, H:A.257, H:G.309, H:G.309, H:Q.315, H:S.318, H:S.318 Water bridges: H:N.42, H:K.248, H:K.248, H:R.255 Salt bridges: H:R.256, H:R.256, H:R.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Z. et al., A three-level regulatory mechanism of the aldo-keto reductase subfamily AKR12D. Nat Commun (2024)

Release Date

2024-04-10

Peptides

Aldo/keto reductase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Aldo/keto reductase

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