SMTL ID : 8jwo.2 (1 other biounit)

Crystal structure of AKRtyl-tylosin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-octamer

Ligands

8 x TYK: TYLOSIN(Non-covalent)

TYK.1: 11 residues within 4Å: Chain A: C.212, E.213, R.215, Q.270, E.273, Q.274, R.277, K.284, E.337, I.338, P.340 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.270, A:R.277, A:E.337, A:I.338, A:P.340 Hydrogen bonds: A:E.213, A:R.215, A:Q.274, A:Q.274, A:R.277, A:K.284 Water bridges: A:C.212, A:R.214, A:Q.274 Salt bridges: A:R.277 TYK.2: 10 residues within 4Å: Chain B: C.212, E.213, R.215, Q.270, E.273, Q.274, R.277, E.337, I.338, P.340 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:E.337, B:P.340 Hydrogen bonds: B:E.213, B:R.215, B:Q.274, B:R.277 Water bridges: B:R.214 Salt bridges: B:R.277 TYK.3: 11 residues within 4Å: Chain C: C.212, E.213, R.215, Q.270, Q.271, E.273, Q.274, R.277, E.337, I.338, P.340 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:P.340 Hydrogen bonds: C:E.213, C:R.215, C:Q.274, C:R.277 Water bridges: C:C.212, C:R.214, C:Q.274, C:R.277, C:R.277 Salt bridges: C:R.277, C:R.277 TYK.4: 10 residues within 4Å: Chain D: C.212, E.213, R.215, Q.270, E.273, Q.274, R.277, E.337, I.338, P.340 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:Q.270, D:R.277, D:E.337, D:P.340 Hydrogen bonds: D:E.213, D:R.215, D:Q.274, D:R.277 Water bridges: D:C.212, D:R.214, D:Q.274 Salt bridges: D:R.277, D:R.277 TYK.5: 10 residues within 4Å: Chain E: C.212, E.213, R.215, Q.270, Q.271, Q.274, R.277, E.337, I.338, P.340 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:R.277, E:E.337, E:I.338, E:P.340 Hydrogen bonds: E:E.213, E:R.215, E:Q.274, E:R.277, E:R.277 Water bridges: E:C.212, E:R.214, E:Q.274 Salt bridges: E:R.277 TYK.6: 10 residues within 4Å: Chain F: C.212, E.213, R.215, Q.270, E.273, Q.274, R.277, E.337, I.338, P.340 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:Q.270, F:P.340 Hydrogen bonds: F:E.213, F:R.215, F:Q.274, F:R.277, F:R.277 Water bridges: F:C.212, F:R.214, F:Q.274 Salt bridges: F:R.277, F:R.277 TYK.7: 10 residues within 4Å: Chain G: C.212, E.213, R.215, Q.270, E.273, Q.274, R.277, E.337, I.338, P.340 12 PLIP interactions: 12 interactions with chain G Hydrophobic interactions: G:E.337, G:P.340 Hydrogen bonds: G:E.213, G:R.215, G:E.273, G:Q.274, G:R.277, G:R.277 Water bridges: G:C.212, G:R.214, G:Q.274 Salt bridges: G:R.277 TYK.8: 11 residues within 4Å: Chain H: C.212, E.213, R.215, Q.270, Q.271, E.273, Q.274, R.277, E.337, I.338, P.340 11 PLIP interactions: 11 interactions with chain H Hydrophobic interactions: H:E.337, H:P.340 Hydrogen bonds: H:E.213, H:R.215, H:Q.270, H:Q.274 Water bridges: H:C.212, H:R.214, H:Q.274 Salt bridges: H:R.277, H:R.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Z. et al., A three-level regulatory mechanism of the aldo-keto reductase subfamily AKR12D. Nat Commun (2024)

Release Date

2024-04-10

Peptides

Aldo/keto reductase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
M

F
N

G
O

H
P

Aldo/keto reductase

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