SMTL ID : 8jxr.1

Structure of nanobody-bound DRD1_LSD complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC.1: 13 residues within 4Å: Chain C: W.83, A.84, D.86, R.87, E.132, E.174, P.175, Y.176, F.177, W.251, L.283, M.351, R.365 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.86, C:R.87, C:R.87, C:R.365

1 x 7LD: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide

7LD.2: 13 residues within 4Å: Chain A: W.89, D.93, I.94, S.97, S.188, S.192, W.275, F.278, F.279, N.282, F.303, V.307, W.311 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.89, A:I.94, A:W.275, A:F.278, A:F.278, A:F.278, A:F.303 Hydrogen bonds: A:S.192, A:S.192 Salt bridges: A:D.93 pi-Stacking: A:F.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, L. et al., Structural basis of psychedelic LSD recognition at dopamine D 1 receptor. Neuron (2024)

Release Date

2024-09-04

Peptides

D(1A) dopamine receptor: A
NBA3: B
Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G: C
Fab 8D3 heavy chain: D
Fab 8D3 light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
L

Membrane

We predict this structure to be a membrane protein.
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D(1A) dopamine receptor

NBA3

Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G

Fab 8D3 heavy chain

Fab 8D3 light chain

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