SMTL ID : 8jyf.1

Crystal Structure of Intracellular B30.2 Domain of VpBTN3 in Complex with DMAPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.125, R.127, R.133, K.135 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.125, A:R.127, A:R.133, A:K.135 SO4.2: 2 residues within 4Å: Chain A: P.132, R.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133 Salt bridges: A:K.108, A:R.133 SO4.3: 3 residues within 4Å: Chain A: S.124, K.125, R.127 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.126, A:Y.126 Salt bridges: A:R.127

1 x DMA: DIMETHYLALLYL DIPHOSPHATE(Non-covalent)

DMA.4: 5 residues within 4Å: Chain B: Y.67, R.127, R.133, R.184, L.186 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.67, B:L.186 Hydrogen bonds: B:R.184 Water bridges: B:R.127, B:R.133, B:R.133 Salt bridges: B:R.127, B:R.133, B:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, L. et al., Phosphoantigens glue butyrophilin 3A1 and 2A1 to activate V gamma 9V delta 2 T cells. Nature (2023)

Release Date

2023-09-13

Peptides

Butyrophylin 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Butyrophylin 3

Related Entries With Identical Sequence