SMTL ID : 8k2b.1

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
95 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x T1C: TIGECYCLINE(Non-functional Binders)
3 x ZN: ZINC ION(Non-covalent)
1 x PNS: 4'-PHOSPHOPANTETHEINE(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Li, X. et al., Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun (2024)
Release Date
2024-07-10
Peptides
Large ribosomal subunit protein uL2m: C
Large ribosomal subunit protein uL3m: D
Large ribosomal subunit protein uL4m: E
Large ribosomal subunit protein bL9m: F
Large ribosomal subunit protein uL10m: G
Large ribosomal subunit protein uL11m: H
Large ribosomal subunit protein uL13m: I
Large ribosomal subunit protein uL14m: J
Large ribosomal subunit protein uL15m: K
Large ribosomal subunit protein uL16m: L
Large ribosomal subunit protein bL17m: M
Mitochondrial ribosomal protein L18, isoform CRA_b: N
Large ribosomal subunit protein bL19m: O
Large ribosomal subunit protein bL20m: P
Large ribosomal subunit protein bL21m: Q
39S ribosomal protein L22, mitochondrial: R
Large ribosomal subunit protein uL23m: S
Large ribosomal subunit protein uL24m: T
Large ribosomal subunit protein bL27m: U
Large ribosomal subunit protein bL28m: V
Large ribosomal subunit protein uL29m: W
Large ribosomal subunit protein uL30m: X
Large ribosomal subunit protein bL32m: Y
Large ribosomal subunit protein bL33m: Z
Large ribosomal subunit protein bL34m: 0
Large ribosomal subunit protein bL35m: 1
Large ribosomal subunit protein bL36m: 2
Large ribosomal subunit protein mL37: 3
Large ribosomal subunit protein mL38: 4
Large ribosomal subunit protein mL39: 5
Large ribosomal subunit protein mL40: 6
Large ribosomal subunit protein mL41: 7
Large ribosomal subunit protein mL42: 8
Large ribosomal subunit protein mL43: 9
Large ribosomal subunit protein mL44: a
Large ribosomal subunit protein mL45: b
Large ribosomal subunit protein mL46: c
Large ribosomal subunit protein mL48: d
Large ribosomal subunit protein mL49: e
Large ribosomal subunit protein mL50: f
Large ribosomal subunit protein mL51: g
39S ribosomal protein L52, mitochondrial: h
Large ribosomal subunit protein mL53: i
Large ribosomal subunit protein mL54: j
Large ribosomal subunit protein mL55: k
Large ribosomal subunit protein mL63: l
Large ribosomal subunit protein mL62: m
Large ribosomal subunit protein mL64: n
Large ribosomal subunit protein mL66: o
Large ribosomal subunit protein mL65: p
Mitochondrial assembly of ribosomal large subunit protein 1: q
Mitochondrial ribosome and complex I assembly factor AltMIEF1: r
Acyl carrier protein, mitochondrial: s
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
LB
D
LC
E
LD
F
LI
G
LJ
H
LK
I
LM
J
LN
K
LO
L
LP
M
LQ
N
LR
O
LS
P
LT
Q
LU
R
LV
S
LW
T
LX
U
La
V
Lb
W
Lu
X
Ld
Y
Lf
Z
Lg
0
Lh
1
Li
2
Lj
3
Lk
4
Ll
5
Lm
6
Ln
7
Lo
8
Lp
9
Lq
a
Lr
b
Ls
c
Lt
d
Lv
e
Lw
f
Lx
g
Ly
h
Lz
i
L3
j
L4
k
L5
l
L6
m
L7
n
L8
o
SR
p
Sf
q
u
r
v
s
w

Large ribosomal subunit protein uL2m

Large ribosomal subunit protein uL3m

Large ribosomal subunit protein uL4m

Large ribosomal subunit protein bL9m

Large ribosomal subunit protein uL10m

Large ribosomal subunit protein uL11m

Large ribosomal subunit protein uL13m

Large ribosomal subunit protein uL14m

Large ribosomal subunit protein uL15m

Large ribosomal subunit protein uL16m

Large ribosomal subunit protein bL17m

Mitochondrial ribosomal protein L18, isoform CRA_b

Large ribosomal subunit protein bL19m

Large ribosomal subunit protein bL20m

Large ribosomal subunit protein bL21m

39S ribosomal protein L22, mitochondrial

Large ribosomal subunit protein uL23m

Large ribosomal subunit protein uL24m

Large ribosomal subunit protein bL27m

Large ribosomal subunit protein bL28m

Large ribosomal subunit protein uL29m

Large ribosomal subunit protein uL30m

Large ribosomal subunit protein bL32m

Large ribosomal subunit protein bL33m

Large ribosomal subunit protein bL34m

Large ribosomal subunit protein bL35m

Large ribosomal subunit protein bL36m

Large ribosomal subunit protein mL37

Large ribosomal subunit protein mL38

Large ribosomal subunit protein mL39

Large ribosomal subunit protein mL40

Large ribosomal subunit protein mL41

Large ribosomal subunit protein mL42

Large ribosomal subunit protein mL43

Large ribosomal subunit protein mL44

Large ribosomal subunit protein mL45

Large ribosomal subunit protein mL46

Large ribosomal subunit protein mL48

Large ribosomal subunit protein mL49

Large ribosomal subunit protein mL50

Large ribosomal subunit protein mL51

39S ribosomal protein L52, mitochondrial

Large ribosomal subunit protein mL53

Large ribosomal subunit protein mL54

Large ribosomal subunit protein mL55

Large ribosomal subunit protein mL63

Large ribosomal subunit protein mL62

Large ribosomal subunit protein mL64

Large ribosomal subunit protein mL66

Large ribosomal subunit protein mL65

Mitochondrial assembly of ribosomal large subunit protein 1

Mitochondrial ribosome and complex I assembly factor AltMIEF1

Acyl carrier protein, mitochondrial

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